PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA05G0208300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 416aa    MW: 42541.1 Da    PI: 6.6304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA05G0208300.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.4e-06312352954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  ORGLA05G0208300.1 312 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 352
                        599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12309361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-10309357No hitNo description
SMARTSM003532.2E-11309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9312360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MYMDAFGWSA PAAPCQPSCG PGGDDDDDVL LAAVLGASFE LHSLVDGGGN GAAGAVRSDD  60
AYGLDVDLPS HQMSLLRCQD GLSALHGDAS PTAAAAAFLD SVDVLPVPAI AGATHDDGGL  120
LDRFAFPNVA ETTTVQAAAS NTAFSGYSSN TTGGGNISSG ESNTYTEVAS TPCAVSTTTT  180
TTALPPSKRK LPEKYPVVGT SSTTKTTTTS ETAAERRSTK RAAGGSSSIT FGGGRHGAGA  240
AAALLGLGRG YEPDTEAIAQ VKEMIYRAAA MRPVTLGGAA SASDPSSAAP PPPQRPRRKN  300
VRISSDPQTV AARLRRERVS ERLRVLQRLV PGGSKMDTAT MLDEAASYLK FLKSQLEALE  360
TLGNGNGNGN LLHHGYYTGS RNATATAATG SSNSTVLAFG RDGLAGFVKS NRNLQL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294298RPRRK
2312317RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638480.10.0PREDICTED: uncharacterized protein LOC9269440
TrEMBLI1PXI50.0I1PXI5_ORYGL; Uncharacterized protein
STRINGORGLA05G0208300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-27bHLH family protein